PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100050100041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29307.2 Da    PI: 8.3255
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100050100041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.8e-30959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+ s++gkl+eys+
  Ote100050100041|100050100041  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVXSHKGKLFEYST 59
                                  79***********************************************96 PP
2K-box106.43.3e-3583172998
                         K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                   +e +   +++ e++kLk+++e Lqr++Rh++GedL+s+s+k+Lq+Le+qL+++lk+iRs+Kn+ll+++i+elq+kek++qe
  Ote100050100041|100050100041  83 NEPESPVNWTLEHSKLKARVELLQRNHRHYMGEDLDSMSMKDLQNLEHQLDTALKNIRSRKNQLLFDSISELQRKEKAIQE 163
                                   55566789************************************************************************* PP

                         K-box  90 enkaLrkkl 98 
                                   +n++L kk 
  Ote100050100041|100050100041 164 QNTMLAKKK 172
                                   *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
CDDcd002654.09E-40274No hitNo description
SuperFamilySSF554551.44E-33292IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.388179IPR002487Transcription factor, K-box
PfamPF014861.1E-2990171IPR002487Transcription factor, K-box
Gene3DG3DSA:3.40.50.3002.6E-4109180IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVXSH KGKLFEYSTD  60
SCMDRILEKY ERYSFAERQL ISNEPESPVN WTLEHSKLKA RVELLQRNHR HYMGEDLDSM  120
SMKDLQNLEH QLDTALKNIR SRKNQLLFDS ISELQRKEKA IQEQNTMLAK KKEKEMGQHT  180
QWEQQQPSTN AVALAPLPPP QPQYLMASQL PTLNNGQVSL LHIGGVYEET SEASRNELDL  240
TLDSLYSCHL GCFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q3e-22174173Myocyte-specific enhancer factor 2B
1tqe_R3e-22174173Myocyte-specific enhancer factor 2B
1tqe_S3e-22174173Myocyte-specific enhancer factor 2B
6c9l_A3e-22174173Myocyte-specific enhancer factor 2B
6c9l_B3e-22174173Myocyte-specific enhancer factor 2B
6c9l_C3e-22174173Myocyte-specific enhancer factor 2B
6c9l_D3e-22174173Myocyte-specific enhancer factor 2B
6c9l_E3e-22174173Myocyte-specific enhancer factor 2B
6c9l_F3e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831692.11e-131PREDICTED: truncated transcription factor CAULIFLOWER A
RefseqXP_020547619.11e-130floral homeotic protein APETALA 1
SwissprotQ6E6S71e-117AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A4D9BPT21e-148A0A4D9BPT2_SALSN; MADS-box transcription factor, plant
STRINGMigut.E00037.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]