PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100050320051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 261aa MW: 28032.3 Da PI: 6.966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100050320051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	146	193	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Ote100050320051\|100050320051 146 SHSLAERARREKISERMKLLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 193 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.33E-10	140	197	No hit	No description
SuperFamily	SSF47459	1.13E-17	140	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	142	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-17	142	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-8	146	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDPPLVNEAS FTAAANPNSY SLAGLLSFPG SGGLGLRMGN LGRGGGGDAS LEESTVTDSA 60 KRRRDVGSSL DDSASKLVST SSANQDASEA DGKRAKESGY MDQSGLKSEA DTNSGTTGKL 120 IEEKSKPEPP KDYIHVRARR GQATDSHSLA ERARREKISE RMKLLQDLVP GCNKVIGKAL 180 VLDEIINYIQ SLQRQVEFLS MKLEAVNSRS HPTIEGFPSK DVAGPAFDAN RIIYGQQTQG 240 VYARGMQAEW LHMQVGGGFE R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071749.1	1e-122	transcription factor bHLH79-like isoform X2
Swissprot	Q9LV17	9e-83	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0H3YBS3	1e-153	A0A0H3YBS3_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_006476705.1	1e-112	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]