PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100050780031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 182aa MW: 20495.4 Da PI: 7.5493

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100050780031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.1	1.2e-06	18	61	10	55
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +R ++++ + +L +llP+ + +++K+s + L +A YIk+Lq Ote100050780031\|100050780031 18 ENRKAQMKALYCKLSSLLPHqS---SKEKVSLCDLLGEAESYIKNLQ 61 58999*************55...999****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.655	8	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-9	11	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-9	17	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDQNPIFLSK SNTKSIQENR KAQMKALYCK LSSLLPHQSS KEKVSLCDLL GEAESYIKNL 60 QERLEDMKQK KNELKVRKSA DFSSNDLNQP RIEVHANGST LGVVLITGLK HHRMFKETVR 120 ILHEESAEVV SAAFSVVDQT VFHTINFEIG GSGLECEAAR ISVRLRDFVA DDNCSKIMLS 180 EN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043394.1	6e-53	PREDICTED: uncharacterized protein LOC105138874
Refseq	XP_024438591.1	1e-52	transcription factor bHLH162-like
TrEMBL	A0A3N7EG36	3e-51	A0A3N7EG36_POPTR; Uncharacterized protein
TrEMBL	A0A4D8ZRG7	2e-51	A0A4D8ZRG7_SALSN; Uncharacterized protein
STRING	POPTR_0011s05320.1	1e-51	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5105	21	31