PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100051510041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 227aa    MW: 26232.6 Da    PI: 4.6402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100051510041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-194189355
                           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a+++ ++k++g
  Ote100051510041|100051510041 41 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDKEARKIRG 89
                                  9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-224098IPR016177DNA-binding domain
PROSITE profilePS5103223.7754097IPR001471AP2/ERF domain
SMARTSM003806.5E-3740103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-324198IPR001471AP2/ERF domain
CDDcd000189.88E-334198No hitNo description
PRINTSPR003671.1E-114152IPR001471AP2/ERF domain
PfamPF008474.7E-124189IPR001471AP2/ERF domain
PRINTSPR003671.1E-116379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDKTSISEMC CGIYLISGFY TDDEHVVNSL PXXXXXXXXL YRGIRQRPWG KWAAEIRDPR  60
KGVRVWLGTY NTAEEAARAY DKEARKIRGK KAKVNFPNED DRYSSTENPD SAKFNNYEHY  120
NEFNQVEFGA YNNMFFTVNN SSESKPEVDG NDGKNAVVGL AXXXXXXXXX XXXXXXXXXX  180
XXXLMAYENY MKFYQIPCYE GQWEAPPSNP QPQTAELWSF DEVSGEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-224197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-2141991574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079624.12e-62ethylene-responsive transcription factor ERF071
TrEMBLA0A4D9AL196e-69A0A4D9AL19_SALSN; EREBP-like factor
TrEMBLA0A4D9C3I47e-69A0A4D9C3I4_SALSN; EREBP-like factor
STRINGMigut.D00130.1.p2e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329