PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100052260051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 441aa MW: 48782 Da PI: 8.8184

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100052260051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.3	4.2e-30	180	238	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+rs +d +++++tYeg+Hnh+ Ote100052260051\|100052260051 180 HDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRSIDDMSILVTTYEGTHNHP 238 7************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-31	164	240	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-27	171	240	IPR003657	WRKY domain
PROSITE profile	PS50811	28.472	174	240	IPR003657	WRKY domain
SMART	SM00774	5.3E-36	179	239	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	181	238	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MQEENVTREN VKMEEVREEN ERLKLTLSQM MKDYHSLKKQ INGITQEDQP KKPTDLASMA 60 ASDDDNDSEL VSLSLGRFSA DSKMEEMKKK KSNNNNSLKE SKKVNGIELG LNNFGEDSMN 120 LKADENSLDE SKEEGSNDVR STRKSPAKSS RVEDEEMLQN SPLKKPRVSV RTVCNTQTMH 180 DGCQWRKYGQ KIAKGNPCPR AYYRCTVSPS CPVRKQVQRS IDDMSILVTT YEGTHNHPLP 240 PSATTMASTT SAAAAMLNCG SSTSPPPIIN GLFGFTNNFP RTXXXXXXXX XXXXXXXXXX 300 XXXXKFSSNP FSTPTSLNFS AINNSSPYSR PPFLSKTQTP NDQKITAVTK AITHDPTFQS 360 ALAAAITSFV GNSNASSRMN FHLNFSQPSS TSANGCAATF MNRYQNSQQK SSTHFAPSTF 420 SASKSQAVPL ADEGEVQMMK L

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MQEENVTREN VKMEEVREEN ERLKLTLSQM MKDYHSLKKQ INGITQEDQP KKPTDLASMA  60
ASDDDNDSEL VSLSLGRFSA DSKMEEMKKK KSNNNNSLKE SKKVNGIELG LNNFGEDSMN  120
LKADENSLDE SKEEGSNDVR STRKSPAKSS RVEDEEMLQN SPLKKPRVSV RTVCNTQTMH  180
DGCQWRKYGQ KIAKGNPCPR AYYRCTVSPS CPVRKQVQRS IDDMSILVTT YEGTHNHPLP  240
PSATTMASTT SAAAAMLNCG SSTSPPPIIN GLFGFTNNFP RTXXXXXXXX XXXXXXXXXX  300
XXXXKFSSNP FSTPTSLNFS AINNSSPYSR PPFLSKTQTP NDQKITAVTK AITHDPTFQS  360
ALAAAITSFV GNSNASSRMN FHLNFSQPSS TSANGCAATF MNRYQNSQQK SSTHFAPSTF  420
SASKSQAVPL ADEGEVQMMK L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	171	241	2	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552049.1	9e-94	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	8e-74	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A4D8ZMU8	1e-153	A0A4D8ZMU8_SALSN; Uncharacterized protein
STRING	Migut.L01332.1.p	2e-96	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]