PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100054180051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 147aa    MW: 15901.1 Da    PI: 10.951
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100054180051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.6e-192155135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Ote100054180051|100054180051 21 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 55
                                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.2021551IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-141575IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-121655No hitNo description
CDDcd002028.83E-132073No hitNo description
Gene3DG3DSA:3.30.50.109.4E-162055IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.4E-172155IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSSQTLTPDR VSSDGSNVKT CVDCGTSKTP LWRGGPAGPK SLCNACGIRS RKKRRALMGV  60
TKDEKKAKKS CKNVISHQSQ SRNSSTVSSG DSTGKIGESS FNKKLWAFGR DVALQRPRSN  120
TNRRRKLGEE EQAAFLLMAL SCGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100810.18e-73GATA transcription factor 15-like
SwissprotQ8LG102e-35GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A4D9A7J83e-71A0A4D9A7J8_SALSN; Uncharacterized protein
STRINGMigut.G00106.1.p4e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]