PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100054930081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family S1Fa-like
Protein Properties Length: 84aa    MW: 9459.23 Da    PI: 10.4216
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100054930081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA123.47.5e-391984470
                          S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                   ++e+kG+nPGlivll+vggll+vflvgny ly+yaqk+lPPrkkkP+skkk+k e+l+qGv++PGe
  Ote100054930081|100054930081 19 PNAESKGFNPGLIVLLLVGGLLMVFLVGNYSLYMYAQKTLPPRKKKPISKKKMK-ERLRQGVSAPGE 84
                                  578**************************************************7.9**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0081784No hitNo description
PfamPF046894.8E-372184IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MDFEDQSPPS FDRMKDMVPN AESKGFNPGL IVLLLVGGLL MVFLVGNYSL YMYAQKTLPP  60
RKKKPISKKK MKERLRQGVS APGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.25e-31DNA-binding protein S1FA
RefseqXP_024026346.15e-31DNA-binding protein S1FA
SwissprotP425531e-15S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLW9SCA31e-24W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGLus100150731e-29(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249