PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100055140101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 99aa    MW: 11494.4 Da    PI: 10.612
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100055140101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.9e-092213756
                                  CTS-HHHHHHHHHHHHHHHH CS
                      Homeobox 37 lgLterqVkvWFqNrRakek 56
                                  l+L+ rqV vWFqNrRa+ k
  Ote100055140101|100055140101  2 LRLKPRQVEVWFQNRRARSK 21
                                  89****************98 PP
2HD-ZIP_I/II75.87.4e-252553690
                   HD-ZIP_I/II 36 LglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                                  L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n++L+keveeLr +
  Ote100055140101|100055140101  2 LRLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLNEQNKKLHKEVEELR-A 55
                                  89**************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.11123IPR001356Homeobox domain
PfamPF000467.8E-7221IPR001356Homeobox domain
CDDcd000862.10E-5224No hitNo description
SuperFamilySSF466897.94E-8232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-7229IPR009057Homeodomain-like
PfamPF021834.9E-102356IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.7E-172366IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MLRLKPRQVE VWFQNRRARS KLKQTEMECE YLKRWFGSLN EQNKKLHKEV EELRAIKVGS  60
HHSPPPPSAL TMCPRCQRVA AAAGEHRLLH ISSSASCFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070725.15e-41homeobox-leucine zipper protein HOX3
SwissprotQ8S9N65e-37ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLA0A4D8YBP01e-41A0A4D8YBP0_SALSN; Homeobox-leucine zipper protein
STRINGMigut.E00430.1.p3e-39(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Publications ? help Back to Top
  1. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]