PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100055340031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 124aa    MW: 13832.5 Da    PI: 9.1381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100055340031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12555146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                  ++rWT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  Ote100055340031|100055340031  5 KQRWTPEEEAALKAGINKYGVGKWSTILKDPEfnttlRSRSNVDLKDKWRN 55
                                  79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.147163IPR017930Myb domain
SuperFamilySSF466891.44E-16258IPR009057Homeodomain-like
SMARTSM007176.4E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-15556IPR009057Homeodomain-like
PfamPF002497.1E-9555IPR001005SANT/Myb domain
CDDcd116601.38E-21656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MGAPKQRWTP EEEAALKAGI NKYGVGKWST ILKDPEFNTT LRSRSNVDLK DKWRNMSFMA  60
NGLGSRRANV ALRNSQVALK HDERTSSDSF GVEKDPVVLD AKCLSEVYVT VEDTDSGNQI  120
SRLT
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854030.13e-43PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_012854037.13e-43PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_012854044.13e-43PREDICTED: telomere repeat-binding factor 1-like
SwissprotC0HIA31e-29SMH6_MAIZE; Single myb histone 6
TrEMBLA0A0K1SBA37e-46A0A0K1SBA3_REHGL; Single MYB histone protein
STRINGMigut.H00343.1.p1e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]