PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100055840011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SRS
Protein Properties Length: 81aa    MW: 8864.79 Da    PI: 9.6336
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100055840011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702591.8e-188642175
                        DUF702 21 heRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrk 75
                                  ++   tCCks+g+d +thvkstWvpaa+rrer  +++a  s++++s     +  ++ ++
  Ote100055840011|100055840011  8 YTGGGTCCKSKGYDGTTHVKSTWVPAARRRERELMATAVGSSRSTSGrenlN--SAAQQ 64
                                  66667***************************76666554444333323222..22222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.2E-16768IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-131236IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MSSEDYAYTG GGTCCKSKGY DGTTHVKSTW VPAARRRERE LMATAVGSSR STSGRENLNS  60
AAQQRRLYLL RNEADASIPS F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231051.26e-14protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A4D9ASV13e-13A0A4D9ASV1_SALSN; Uncharacterized protein
TrEMBLA0A4D9C4A51e-13A0A4D9C4A5_SALSN; Uncharacterized protein