PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100055840041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 245aa    MW: 28213.6 Da    PI: 6.014
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100055840041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-0815382246
                                  T-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                                   +W+ Ia+ ++ gRt++++k++w++
  Ote100055840041|100055840041 15 CRWSIIAAQLP-GRTDNDIKNYWNT 38
                                  47*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.641144IPR017930Myb domain
CDDcd001673.31E-6240No hitNo description
SuperFamilySSF466891.71E-71444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-111544IPR009057Homeodomain-like
PfamPF002493.7E-61538IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MWKELQIEFL LCKKCRWSII AAQLPGRTDN DIKNYWNTKL KKKLMGLIPS KYSQLPFSNT  60
FQIQQTHSLS TMSQLYNSFH LQNAKSSFNQ VESFPAPQNL VYCNNPDSFS LNTTSQYPYY  120
SQNEEILADL QYCHGKESNN MLMFGGNEAS CSSSDGSCGK DQVKREEVGC GYNGFYNGFD  180
QKFMLHYGGS GFVDEKANGI LESRQLQCDL EEVKQLISSG XXXXXXXXXX XXFLFNHDER  240
EMQYY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090100.15e-50transcription factor RAX2-like
TrEMBLA0A4D8ZMH75e-47A0A4D8ZMH7_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1829833