PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100055870051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 257aa    MW: 28312.6 Da    PI: 8.0099
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100055870051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-111054345
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                   W+ eEd+++ +a++ ++ +   +W++Ia ++  g++ +++k+++ 
  Ote100055870051|100055870051 10 VWSREEDKQFEKAIATYPEEscdRWEKIAGEVA-GKSVEEIKHHYE 54
                                  6*****************99*************.**********96 PP
2Myb_DNA-binding44.14.7e-14113157347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Ote100055870051|100055870051 113 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 157
                                   6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.169666IPR017884SANT domain
SMARTSM007172.7E-11759IPR001005SANT/Myb domain
PfamPF002491.4E-91054IPR001005SANT/Myb domain
SuperFamilySSF466895.18E-121065IPR009057Homeodomain-like
CDDcd001676.92E-111157No hitNo description
Gene3DG3DSA:1.10.10.601.2E-51154IPR009057Homeodomain-like
PROSITE profilePS5129417.61105162IPR017930Myb domain
SuperFamilySSF466896.35E-17108163IPR009057Homeodomain-like
SMARTSM007174.5E-11110160IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.2E-17110160IPR006447Myb domain, plants
CDDcd001677.68E-11113158No hitNo description
Gene3DG3DSA:1.10.10.604.2E-11113156IPR009057Homeodomain-like
PfamPF002495.9E-12113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MPGVESSSCV WSREEDKQFE KAIATYPEES CDRWEKIAGE VAGKSVEEIK HHYELLVDDV  60
SRIESGFVEV PCYNSSSSSD EDGAAKKSAN SSHLKCDGFK PSRSDQERRK GIAWTEDEHR  120
LFLLGLEKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR SSIHDITSVE  180
GGDVSAPQGP ITGQSTARGP NAKSGKQSPG GSMYGHPIVG TPVNLPPPPP HMTYGVPVLP  240
GPTMNVAYPM PHTSVRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-15176176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070471.11e-124transcription factor SRM1
RefseqXP_011070472.11e-124transcription factor SRM1
RefseqXP_020547442.11e-124transcription factor SRM1
RefseqXP_020547443.11e-124transcription factor SRM1
SwissprotQ9FNN61e-104SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2G9HW371e-124A0A2G9HW37_9LAMI; Zuotin
STRINGEMJ244541e-116(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]