PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100056650021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WOX

Protein Properties

Length: 293aa MW: 32243.5 Da PI: 6.1633

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100056650021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.6	1.8e-07	17	45	33	57
HHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 33 LAkkl....gLterqVkvWFqNrRakekk 57 L+++l ++ +++V++WFqNr+ + k+ Ote100056650021\|100056650021 17 LTHQLqeygQVGDANVFYWFQNRKSRSKH 45 777787778999**************995 PP
2	Wus_type_Homeobox	52.6	1.1e-17	14	47	32	65
Wus_type_Homeobox 32 iqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 i +t++L+eyG+++d+NVfyWFQNrk+R+++kq Ote100056650021\|100056650021 14 IDPLTHQLQEYGQVGDANVFYWFQNRKSRSKHKQ 47 667899**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.65E-5	15	51	IPR009057	Homeodomain-like
Pfam	PF00046	4.7E-5	16	45	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTSTPLSFHL ILAIDPLTHQ LQEYGQVGDA NVFYWFQNRK SRSKHKQRQL HTTKAPPQPP 60 TAPPPPNTAA APSPSSSSSD KSSPNNSSEK SISLGPTTVI DLLNSPTASV NQPFLHASAD 120 FMAEPFFFPV QQNTGGXXXX XXXNLTQEFC FPHVTEQNPS FLLSELMLMS NCPSKKIEEE 180 SIKLQQQLSY TGTTTPTNPP NQTIIPPSYS VPSPTDHLLR GCGPTKSTVF INDVCFEVGD 240 GPFNVREAFG EDAVLLQSSG QPVLTDEWGV TLHPLLHGAF YYLLRPERTI HLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096377.1	1e-105	WUSCHEL-related homeobox 9
Refseq	XP_011096378.1	1e-105	WUSCHEL-related homeobox 9
Refseq	XP_011096381.1	1e-105	WUSCHEL-related homeobox 9
TrEMBL	A0A4D9AMH2	3e-92	A0A4D9AMH2_SALSN; Uncharacterized protein
STRING	Migut.M01086.1.p	8e-83	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35