PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100057970011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ZF-HD

Protein Properties

Length: 99aa MW: 10709.9 Da PI: 6.3774

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100057970011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.1	2.1e-33	38	92	6	59
ZF-HD_dimer 6 YkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 Y+eC+kNhAa++GghavDGCgE+mp++++ +++++l CaACgCHRnFHRre+e+ Ote100057970011\|100057970011 38 YRECMKNHAANMGGHAVDGCGEYMPAPSAVaTDPTTLICAACGCHRNFHRREPES 92 ************************9999899*****************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-20	38	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.487	38	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.2E-30	38	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.4E-28	38	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MDLDSSPTRS ADETEIDTPP RTHTQPIKNH HPPPPPPYRE CMKNHAANMG GHAVDGCGEY 60 MPAPSAVATD PTTLICAACG CHRNFHRREP ESPTTAITP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:17233795}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269\|PubMed:17233795}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070997.1	7e-40	zinc-finger homeodomain protein 10
Swissprot	Q9SEZ1	2e-27	ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBL	A0A2G9I2U8	6e-36	A0A2G9I2U8_9LAMI; Uncharacterized protein
STRING	XP_004163533.1	4e-31	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]