PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100058150041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YA
Protein Properties Length: 230aa    MW: 25877.1 Da    PI: 5.9377
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100058150041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA41.83.6e-131601823658
                     CBFB_NFYA  36 kpylheSRhkhAlrRpRgsgGrF 58 
                                    pylheSRh+hA+rR+RgsgGrF
  Ote100058150041|100058150041 160 MPYLHESRHQHAIRRERGSGGRF 182
                                   69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-5124185IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.5E-11160182IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115214.151161185IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQSKPETVNQ EETDTYITLN STMRSEPWWT MRGSASDSSS AEQSGDDRSQ SESNDTAKHS  60
LNNTPLLQDK DYRPEDVHLQ HVEPASHPRV DGSLVQPVPL ELVGHSIACA SNPYDPYYGG  120
MMAAYGQPMV PHLYDMHHMR MPLPLEMAQE PVYXXXXXXM PYLHESRHQH AIRRERGSGG  180
RFAKKSDAST SKEAEYQKSQ SGQTGEVPAS QQRELLRSNY APALQPEARP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844659.13e-83PREDICTED: nuclear transcription factor Y subunit A-1
RefseqXP_012844660.13e-83PREDICTED: nuclear transcription factor Y subunit A-1
TrEMBLA0A022QUU73e-72A0A022QUU7_ERYGU; Uncharacterized protein
TrEMBLA5PGU37e-72A5PGU3_ANTMA; YA4
STRINGMigut.N02320.1.p1e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248