PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100059060021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 286aa MW: 31816.5 Da PI: 6.8026

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100059060021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.7e-32	127	180	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Ote100059060021\|100059060021 127 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 180 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.22E-15	124	180	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-28	125	180	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	127	180	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	128	179	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009887	Biological Process	organ morphogenesis
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0009956	Biological Process	radial pattern formation
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010158	Biological Process	abaxial cell fate specification
GO:0010229	Biological Process	inflorescence development
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAIEAPDLSL QISPPNISLS ESDNSSTSLF NLALGHHHED HEQQPYRNVI NHPPIKGIPV 60 YPNRPFPFLY QNQTAVSPPN YYDHQLPCWM AGGRLDGSGS GSSLHGNGIM RSRFLPRLPP 120 KRSMRAPRMR WTTSLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT 180 VKTTDKPVAS SEGSGEDEGV GDHAGQPLFV DQPDGSSPQE DIADYPSTTT TLWSNSSREY 240 WAVESHGLVR SLEVSSKSYK MSVEENHKSP SLEFTLGLNR SNWDGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-17	128	182	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-17	128	182	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-17	128	182	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-17	128	182	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-17	128	182	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-17	128	182	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-17	128	182	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-17	128	182	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099922.1	3e-73	transcription repressor KAN1-like isoform X3
Refseq	XP_011099923.1	3e-73	transcription repressor KAN1-like isoform X5
Swissprot	Q93WJ9	2e-63	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A4D8ZNW1	3e-90	A0A4D8ZNW1_SALSN; Uncharacterized protein
STRING	Bo9g163080.1	1e-68	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2468	23	55

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]