PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100061210071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 219aa MW: 24807.5 Da PI: 11.3763

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100061210071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	71	108	10	47
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 el++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Ote100061210071\|100061210071 71 ELFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 108 89*******************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0095	65	111	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	9.597	66	113	IPR017930	Myb domain
SuperFamily	SSF46689	9.4E-10	70	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-11	71	112	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-7	71	108	IPR001005	SANT/Myb domain
CDD	cd00167	1.25E-6	71	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.7E-7	71	108	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MMLVVLRQGS SLFLAMTLFH PILHWNGGVD VSLRGLSSLL LVVEGGRRRR GGRRSRKGRR 60 GFLGQRRSIS ELFLMGLKKY GKGDWRNISR NFVITRTPTQ VASHAQKYFI RQLSGGKDKR 120 RASIHDITTV NLNDHHTPSP EIKKHPSPDE PSVLAQKTLP FEWNHTSNET FMGFGSFSSP 180 SYGMSSYGLN MQRGVVLDSY MGSQNMVLQM QQEMHYPNA

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080854.1	4e-75	transcription factor DIVARICATA isoform X1
Refseq	XP_020550520.1	4e-75	transcription factor DIVARICATA isoform X2
Swissprot	Q8S9H7	2e-72	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2G9G9Y2	3e-69	A0A2G9G9Y2_9LAMI; Zuotin
STRING	XP_002525595.1	2e-62	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16449	5	5

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]