PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100061800021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 218aa MW: 24380 Da PI: 6.7368

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100061800021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.1e-09	108	165	6	45
HHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-.STCHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as................kapskK.lsKaeiLe 45 ++ErrRR+r+N++++ Lr+++Pk + +a+++ ls +++Le Ote100061800021\|100061800021 108 LMAERRRRKRLNDRLSMLRSVVPKiSKfeverrnpdtrieiwcSAKAGLlLSTVTTLE 165 589*********************5558888877777777777666666677777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.553	102	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-7	105	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-7	108	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	108	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00815	144	185	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-7	188	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEFYTNQEFN LDYFPTTTCF DPPLFGCSSF GHDLSPPAFA VDSSAFNQTL PYLPVLHDEP 60 PFANGLEIGP PCKPEPIFEA VPTFNVGSQI EIRKSKVKKL NGQPSKNLMA ERRRRKRLND 120 RLSMLRSVVP KISKFEVERR NPDTRIEIWC SAKAGLLLST VTTLEALGLE IEHCVISCFN 180 DFALQASCSQ DLKKMSVLDS EDIKQALLRN AGYGGSCL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019438466.1	9e-62	PREDICTED: transcription factor bHLH93-like isoform X3
Swissprot	Q9LSL1	6e-39	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A4D9BCW2	3e-62	A0A4D9BCW2_SALSN; Uncharacterized protein
STRING	XP_002527339.1	4e-53	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]