PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100062210041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 229aa    MW: 25532 Da    PI: 8.4073
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100062210041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.92.2e-361794278
                                  -SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                                  C v+gC+adls +++yhrrhkvCe+hsk+p      g+eqrfCqqCsrf +l efDe+krsCr+rL++hn+rrrk+q+
  Ote100062210041|100062210041 17 CLVDGCSADLSLCRDYHRRHKVCEAHSKTPXXXxXXGREQRFCQQCSRFQSLVEFDEGKRSCRKRLDGHNRRRRKPQP 94
                                  *****************************98763789**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-281379IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.3851492IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-331595IPR004333Transcription factor, SBP-box
PfamPF031105.9E-271791IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MESSSKRAKP LGSIAHCLVD GCSADLSLCR DYHRRHKVCE AHSKTPXXXX XXGREQRFCQ  60
QCSRFQSLVE FDEGKRSCRK RLDGHNRRRR KPQPSESLPR TTGLDFSTQN YSKLVSFDTP  120
QMLGGASYSL WSHETANNHQ LNYVGAAIQQ GSSFVDPNAT TRMLPQVVEC DGALSLLSSS  180
PSPRVMDSVG YGVGVGQYES KAATSHFPEM FEHAPQGSST HQTLSFMWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-2417911184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022885332.15e-58teosinte glume architecture 1-like
RefseqXP_022885337.15e-58teosinte glume architecture 1-like
RefseqXP_022885345.15e-58teosinte glume architecture 1-like
RefseqXP_022885354.15e-58teosinte glume architecture 1-like
RefseqXP_022885362.15e-58teosinte glume architecture 1-like
RefseqXP_022885372.15e-58teosinte glume architecture 1-like
RefseqXP_022885384.15e-58teosinte glume architecture 1-like
TrEMBLA0A2G9FXF53e-65A0A2G9FXF5_9LAMI; Uncharacterized protein
STRINGXP_009621034.15e-55(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037