PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100062800011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 89aa MW: 9379.49 Da PI: 8.7566

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100062800011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	41	86	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W+++Ed +l +v ++G ++W++Iar ++ gR++k+c++rw + Ote100062800011\|100062800011 41 RGPWSPQEDAILSGLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 86 89****************************.*********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.218	36	89	IPR017930	Myb domain
SuperFamily	SSF46689	5.17E-16	38	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-20	40	89	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-13	40	89	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-17	41	86	IPR001005	SANT/Myb domain
CDD	cd00167	1.16E-14	43	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MTAVPPNPND YATSNFGYSD VETTEEGGGI GAAAAAKGKV RGPWSPQEDA ILSGLVSKFG 60 ARNWSLIARG IPGRSGKSCR LRWCNQLDP

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076754.1	1e-31	transcription factor MYB25
Refseq	XP_023757203.1	8e-32	transcription factor MYB1-like
Swissprot	Q42575	3e-22	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A4D8ZHE6	1e-30	A0A4D8ZHE6_SALSN; Myb proto-oncogene protein, plant
STRING	XP_008233695.1	7e-29	(Prunus mume)
STRING	GSMUA_Achr6P33470_001	2e-29	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16833	4	5

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]