PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100062960241

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Protein Properties

Length: 473aa MW: 54031.2 Da PI: 9.4843

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100062960241	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.2	2.2e-16	375	464	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k +++s+v+ +l lp +f++++ +++++t+ l de+ ++ e k+ ++++ l++GW++F+ +++L +gD +v Ote100062960241\|100062960241 375 FVKPMLQSHVTGGFWLGLPQQFCKANL--PNRDVTIDLVDEDDQVSETKY--LAHKSG--LSAGWRGFAIDHELVDGDALV 449 89*******************9995..35889************..555555..9**************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F+l++ ++f +v ++r Ote100062960241\|100062960241 450 FQLIEPTSF--KVYIIR 464 *988888..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.85E-23	369	466	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-19	369	465	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.04E-26	373	464	No hit	No description
Pfam	PF02362	2.7E-14	375	464	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.251	375	466	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-22	375	466	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MGIVKLRQEK HEIETQNSDD SDCCAPDPSD SSSKQGKKKR RKRNIMQLEK KEKGGSRKLK 60 TPKLKDGKAS DNSKKSGRTA RKRTRYTDIY DDVEAKYSVM ERAYRVLARL ENELPHFLKC 120 MLPSNVAHGF WLARLECRME GLFHIAQVRI VRVHDPDVVT AALSLMHINA SWRGNDGDKD 180 DRKRKKTKYV EPFLLDDSAS PVENVKGKNI PNSPVSDDSS DDNCSDVIEK GPEIRNQHQP 240 NNELCYPETS FLRDHASYEE SRKKRLEENK KRMEELNLNK LSQALHTPKS SPMKKVKPKT 300 PKQPVDPSAI RRSSRVKEMP PRSYKEVAVE AMGKPRSYKR RDLLNRVYAG DEERQYVIQR 360 AEDLQSGLDQ DIPSFVKPML QSHVTGGFWL GLPQQFCKAN LPNRDVTIDL VDEDDQVSET 420 KYLAHKSGLS AGWRGFAIDH ELVDGDALVF QLIEPTSFKV YIIRVNEPGD SSN

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MGIVKLRQEK HEIETQNSDD SDCCAPDPSD SSSKQGKKKR RKRNIMQLEK KEKGGSRKLK  60
TPKLKDGKAS DNSKKSGRTA RKRTRYTDIY DDVEAKYSVM ERAYRVLARL ENELPHFLKC  120
MLPSNVAHGF WLARLECRME GLFHIAQVRI VRVHDPDVVT AALSLMHINA SWRGNDGDKD  180
DRKRKKTKYV EPFLLDDSAS PVENVKGKNI PNSPVSDDSS DDNCSDVIEK GPEIRNQHQP  240
NNELCYPETS FLRDHASYEE SRKKRLEENK KRMEELNLNK LSQALHTPKS SPMKKVKPKT  300
PKQPVDPSAI RRSSRVKEMP PRSYKEVAVE AMGKPRSYKR RDLLNRVYAG DEERQYVIQR  360
AEDLQSGLDQ DIPSFVKPML QSHVTGGFWL GLPQQFCKAN LPNRDVTIDL VDEDDQVSET  420
KYLAHKSGLS AGWRGFAIDH ELVDGDALVF QLIEPTSFKV YIIRVNEPGD SSN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71