PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100063370101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 145aa MW: 14975.6 Da PI: 3.8465

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100063370101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	54.8	3.6e-17	32	66	120	154
DUF702 120 vssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 vs++dd+e+++aYqtav+i+GhvfkGiLydqG+e+ Ote100063370101\|100063370101 32 VSAIDDAEDQYAYQTAVNISGHVFKGILYDQGTES 66 89******************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01624	4.2E-18	32	63	IPR006511	Lateral Root Primordium type 1, C-terminal
Pfam	PF05142	1.1E-14	32	65	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MRSSGGGGIS CQDCGNXXXX XLLTYAVPDL LVSAIDDAED QYAYQTAVNI SGHVFKGILY 60 DQGTESQYAA AGETSSGGGS VSVGVQQLNL ITGXXXXXXX XXXXXXXXGG GGGGGSPSPY 120 LDPSLFPAPL NSFMAGTQFF PPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090405.1	2e-37	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	2e-27	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A4D9AWL5	6e-40	A0A4D9AWL5_SALSN; Uncharacterized protein
STRING	EOX90942	4e-30	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18294	2	4

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]