PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100064160041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 178aa MW: 19176.4 Da PI: 8.2156

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100064160041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	105.5	8.9e-33	6	69	2	65
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaa 65 rs +++C+dCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpaa+rr+r ++l+ + ++ aa Ote100064160041\|100064160041 6 RSEGINCEDCGNQAKKDCEHMRCRTCCKSRGFPCQTHVKSTWVPAARRRDRLHNLKRLRENPAA 69 56789**********************************************9999988777654 PP
2	DUF702	78.7	1.6e-24	73	123	104	154
DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +P+ev+s+a+frcvrv+++d++ee laYqtav+igGhvfkGi ydqG+e+ Ote100064160041\|100064160041 73 GFPNEVNSPAIFRCVRVTAMDEAEETLAYQTAVNIGGHVFKGISYDQGTES 123 4***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.5E-29	9	66	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-27	11	53	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	8.2E-22	70	122	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	5.5E-24	73	120	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MSGQGRSEGI NCEDCGNQAK KDCEHMRCRT CCKSRGFPCQ THVKSTWVPA ARRRDRLHNL 60 KRLRENPAAA SGGFPNEVNS PAIFRCVRVT AMDEAEETLA YQTAVNIGGH VFKGISYDQG 120 TESSSASQHV EAAAAPPSAG AATTTTNVSA SSMLEASLYP NQMTGYMSGT QFFLPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839127.1	4e-69	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	8e-59	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A4D8Y952	2e-75	A0A4D8Y952_SALSN; Uncharacterized protein
STRING	Migut.N03122.1.p	2e-68	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]