PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100064780151

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 293aa MW: 33010.4 Da PI: 4.7986

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100064780151	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.9e-19	75	128	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ F +++++ e++ +LA++lgL+ rq+ vWFqNrRa++k Ote100064780151\|100064780151 75 KKRRLTVDQVQFLERSFIEDNKLEPERKIQLANELGLQPRQIAVWFQNRRARWK 128 45689************************************************9 PP
2	HD-ZIP_I/II	128.9	2.2e-41	75	164	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kkrrl+ +qv++LE+sF e++kLeperK +la+eLglqprq+avWFqnrRAR+ktk++E dye+L+++y++lk++ ++L k Ote100064780151\|100064780151 75 KKRRLTVDQVQFLERSFIEDNKLEPERKIQLANELGLQPRQIAVWFQNRRARWKTKHMEADYETLRARYETLKADYDNLLK 155 9****************************************************************************** PP HD-ZIP_I/II 83 eveeLreel 91 e+++L+ee+ Ote100064780151\|100064780151 156 ENDKLKEEV 164 ****987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-19	65	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.989	70	130	IPR001356	Homeobox domain
SMART	SM00389	2.9E-18	73	134	IPR001356	Homeobox domain
CDD	cd00086	1.42E-18	75	131	No hit	No description
Pfam	PF00046	1.3E-16	75	128	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-19	77	137	IPR009057	Homeodomain-like
PRINTS	PR00031	1.7E-5	101	110	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-5	110	126	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.9E-14	130	169	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAGNASAHGG GAPNQTRFNQ PLDAVNEESS LGSKAMLSFG AVAGVKRSGN LVFSSFDEEE 60 FGDKFLDEYI NQLDKKRRLT VDQVQFLERS FIEDNKLEPE RKIQLANELG LQPRQIAVWF 120 QNRRARWKTK HMEADYETLR ARYETLKADY DNLLKENDKL KEEVICLKQN NLGGDMKNSN 180 SHLHDPKRQP QVLPGEANAR AISEDEGSEV SALACKNEEQ SSAKSEVTDG IHSPILESGV 240 SCHVLDPDYS DSSHEDSVQP DCVFAKIEDA HHNASPFYYG FPVEDHGFNF WPY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087214.1	6e-94	homeobox-leucine zipper protein HAT5
TrEMBL	A0A4D9A6R2	1e-118	A0A4D9A6R2_SALSN; Homeobox-leucine zipper protein
STRING	Migut.D01856.1.p	2e-85	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95