PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100065310011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 489aa MW: 54776 Da PI: 4.4254

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100065310011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	130.1	2.5e-40	136	488	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL + eav++g++ela+ +++ + + +sp g++++R+a + + +++ +e++s++ +aa+ Ote100065310011\|100065310011 136 LIHLLRAYGEAVENGHKELAEVIVNSICDKSSPLGNTIERVAYNLFQSRESQGE-------------YLREESSKNLAAAF 203 68999999********************************977654333322.............233344789999 PP GRAS 82 klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeele 159 k+++++ P +f+h+taN+aIl+++ + +Hi+Dfd+++G+QWp+Ll+aL+++ +R+T + s e e Ote100065310011\|100065310011 204 KVLYQCIPNGRFAHFTANSAILDSIPDDvGVIHIVDFDMGEGVQWPPLLEALSTKG---KAVRLTSIRSDEGWnsCCWDFE 281 ***********************9998999******************84...56*****66447788999 PP GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk... 237 t++rL A+++gv++e++ +++ed+ + L + ++ n+++ l ++ ++ +++s ++ +Lk k+l ++ Ote100065310011\|100065310011 282 GTRKRLLFHAKQCGVSLEIKE---TSIEDV-GDGL---GRGWVVFNCMVGLPHMG-RRRPMKS-INGFLKKAKGLIANygg 353 ******************8...466666.4555...4779********8.6667777.79*****987666 PP GRAS 238 vvvvveqe....adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313 ++v+ + e ++ n+ ++ f l++y a+++sle ++p+ e+++v + l+ +++ va + ++ + ++++++ Ote100065310011\|100065310011 354 ILVHGDGEamedLNScNGYGYASYFDGLLRHYLAVLESLELNFPAYLAEARVVMESLFLAPLMSPVAWSRDWEETQKNQMK 434 9999998854444445888*********************9985555555555777788888888888777788888 PP GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373 +W G ++++l++ ++++ +++++ s r+e +++++vl Wk+ pLv vS W Ote100065310011\|100065310011 435 TW------LGGRKLSLGSLIEAK-EMVVEGETSYSLRIEgARENEMVLRWKETPLVRVSTW 488 88......577788887776554.344444445667888888***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	18.733	110	476	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.7E-38	136	488	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MMQQAELFPT WPNFNFASSI LDQEIDLCMV DDHDRDFSYV ISSNTCVPDM ILDGFYDLKE 60 VQTGLDMEGL AAISRGDIEE ICGWINGDDI EADSSSHDIT MEGDDWSPTL SSESNHNCSM 120 FPQLDSPDIV NDHLMLIHLL RAYGEAVENG HKELAEVIVN SICDKSSPLG NTIERVAYNL 180 FQSRESQGEY LREESSKNLA AAFKVLYQCI PNGRFAHFTA NSAILDSIPD DVGVIHIVDF 240 DMGEGVQWPP LLEALSTKGK AVRLTSIRSD EGWNSCCWDF EGTRKRLLFH AKQCGVSLEI 300 KETSIEDVGD GLGRGWVVFN CMVGLPHMGR RRPMKSINGF LKKAKGLIAN YGGILVHGDG 360 EAMEDLNSCN GYGYASYFDG LLRHYLAVLE SLELNFPAYL AEARVVMESL FLAPLMSPVA 420 WSRDWEETQK NQMKTWLGGR KLSLGSLIEA KEMVVEGETS YSLRIEGARE NEMVLRWKET 480 PLVRVSTWM

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MMQQAELFPT WPNFNFASSI LDQEIDLCMV DDHDRDFSYV ISSNTCVPDM ILDGFYDLKE  60
VQTGLDMEGL AAISRGDIEE ICGWINGDDI EADSSSHDIT MEGDDWSPTL SSESNHNCSM  120
FPQLDSPDIV NDHLMLIHLL RAYGEAVENG HKELAEVIVN SICDKSSPLG NTIERVAYNL  180
FQSRESQGEY LREESSKNLA AAFKVLYQCI PNGRFAHFTA NSAILDSIPD DVGVIHIVDF  240
DMGEGVQWPP LLEALSTKGK AVRLTSIRSD EGWNSCCWDF EGTRKRLLFH AKQCGVSLEI  300
KETSIEDVGD GLGRGWVVFN CMVGLPHMGR RRPMKSINGF LKKAKGLIAN YGGILVHGDG  360
EAMEDLNSCN GYGYASYFDG LLRHYLAVLE SLELNFPAYL AEARVVMESL FLAPLMSPVA  420
WSRDWEETQK NQMKTWLGGR KLSLGSLIEA KEMVVEGETS YSLRIEGARE NEMVLRWKET  480
PLVRVSTWM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095222.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A4D9ARC0	1e-174	A0A4D9ARC0_SALSN; Uncharacterized protein
STRING	Migut.J00119.1.p	1e-161	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5361	19	38