PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100065340071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 326aa MW: 36585.1 Da PI: 8.2142

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100065340071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.7e-16	132	178	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Ote100065340071\|100065340071 132 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 178 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.7E-19	125	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-19	125	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.65E-15	131	182	No hit	No description
Pfam	PF00010	1.9E-13	132	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.9E-18	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MANFYNNYHA PQEPDEISVF LQQILLRSSS SSSHSFLRQQ SILPTSXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXLLL ETWTMKRMNV AMREAVEALV SETAAKSAPP 120 RCSSKRSRAA EVHNLSEKRR RSRINEKMKA LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ 180 VQANVNYAKR VEPLSSLPAG YAASAQSSFS NETGYSVLRI PENCVKQEHV SDFSSINDKT 240 SADVESSLLP HQFGAFQLCK SSKKEKLLPC LPLVEDRQQG AKVTSSIPDE AQTSRLKDDI 300 LESCVAGAAD ILLTNYVNNQ ALSHHN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099122.1	1e-56	transcription factor SPATULA
TrEMBL	A0A0H3YC58	3e-90	A0A0H3YC58_SALMI; Basic helix-loop-helix transcription factor
STRING	VIT_07s0031g00450.t01	9e-41	(Vitis vinifera)
STRING	Migut.H00420.1.p	7e-41	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9850	22	27