PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100065610001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 204aa    MW: 24541.1 Da    PI: 10.0737
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100065610001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-19256256
                                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  r+++++++eql  Le  Fe+++++ +e++e+LA++l ++ rqV vWFqNrRa++k
  Ote100065610001|100065610001  2 RRKRKLSEEQLSKLEISFEREHKLETERKERLAAELAMEPRQVAVWFQNRRARWK 56
                                  455699************************************************9 PP
2HD-ZIP_I/II1025e-33286185
                   HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83
                                  ++kr+ls+eq++ LE sFe+e+kLe+erK++la eL ++prqvavWFqnrRAR+k+k++E+d++ L++++ +   +++ L+++
  Ote100065610001|100065610001  2 RRKRKLSEEQLSKLEISFEREHKLETERKERLAAELAMEPRQVAVWFQNRRARWKAKKMEEDFSNLRSHLHSTLLHKCCLHTQ 84
                                  69*********************************************************************999999999988 PP

                   HD-ZIP_I/II 84 ve 85
                                  v 
  Ote100065610001|100065610001 85 VI 86
                                  63 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.9E-17162IPR001356Homeobox domain
PROSITE profilePS5007117.637158IPR001356Homeobox domain
CDDcd000861.00E-13259No hitNo description
SuperFamilySSF466891.45E-16268IPR009057Homeodomain-like
PfamPF000463.5E-16256IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-19364IPR009057Homeodomain-like
PROSITE patternPS0002703356IPR017970Homeobox, conserved site
PfamPF143921.2E-1290134IPR025836Zinc knuckle CX2CX4HX4C
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRRKRKLSEE QLSKLEISFE REHKLETERK ERLAAELAME PRQVAVWFQN RRARWKAKKM  60
EEDFSNLRSH LHSTLLHKCC LHTQVIHNLN TPIKKGVKLR IGNREPIWIP LKYERLPTLC  120
YRWGKMGHNY SECEEYFDKL ASEGEIDKEE MPYEEWLRAT PGKHITIAHE KRNEDGNKVR  180
KELFTKARDN GQERGQKKQP HRTD