PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100066380011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 136aa    MW: 15268 Da    PI: 5.036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100066380011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-202171255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +++GVr+++ +gr++AeIrd    + +  r++lg+f taeeAa+a+++a+  ++g
  Ote100066380011|100066380011 21 KFRGVRRRP-WGRFAAEIRDS---NrQGVRVWLGTFATAEEAARAYDRAAYTMRG 71
                                  89*******.**********4...3345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-182079No hitNo description
PROSITE profilePS5103223.3142179IPR001471AP2/ERF domain
PfamPF008473.4E-152171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-312181IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-232181IPR016177DNA-binding domain
SMARTSM003801.5E-342185IPR001471AP2/ERF domain
PRINTSPR003671.3E-102233IPR001471AP2/ERF domain
PRINTSPR003671.3E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MMDETPRDTA HQQGKDGGEA KFRGVRRRPW GRFAAEIRDS NRQGVRVWLG TFATAEEAAR  60
AYDRAAYTMR GPLAVLNFPQ EYLQPPLPPS SSSTAAASSS MIKNEVEQGK EVLEFECLDD  120
KLLEDLLEYG ERNTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3221221114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733438.14e-46ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC54e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A4D9AVX72e-50A0A4D9AVX7_SALSN; Pathogenesis-related proteins transcriptional activator PTI5
STRINGXP_010039174.16e-45(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]