PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100067460061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LSD

Protein Properties

Length: 195aa MW: 21616.3 Da PI: 9.0548

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100067460061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.8	2e-14	108	131	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C+t+L+YP+GAp V+Ca+C+ Ote100067460061\|100067460061 108 CGNCHTTLMYPYGAPTVKCAICQY 131 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.2E-11	105	134	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.7E-14	108	132	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MQSQDKTPML ILHFQHVANC GLTILVSRFS FKTMDGNGPT DMWRLSYTPN AYLWCYKCEV 60 LLLSHSKPSA RTLLFLWQTL YFPFHSILAL GTLIPYKLFS PNIAHVNCGN CHTTLMYPYG 120 APTVKCAICQ YITNVNMGNV RVPLPMHRPV GPASMPSGPA PLPNSQSQTV VENPMSVDKS 180 GKLVSNVVVG VTTDR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67