PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100067470011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 208aa    MW: 21432.5 Da    PI: 9.404
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100067470011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.4e-12173197126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +kt+lC +f++ G C +GdrC+FaHg
  Ote100067470011|100067470011 173 FKTKLCENFSK-GSCTFGDRCHFAHG 197
                                   69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.498117IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.63E-1572151IPR004088K Homology domain, type 1
SMARTSM003222.1E-1278148IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.1E-1679147IPR004088K Homology domain, type 1
PROSITE profilePS5008414.3279143IPR004088K Homology domain, type 1
CDDcd001052.24E-1481143No hitNo description
PfamPF000135.1E-1281145IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.4E-16167203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-9171202IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7172198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.474172199IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9173197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAGCPFGENC HFLHFVPGGY KVVAQMTNSA SLPAPTTAAG PLPIQNGSAP AAAKTKLCNK  60
YNSAEEPHTQ GLAASFGASA TAKISVDASL AGAVIGKGGI NSKQICRQTG AKLSIRDHET  120
NPGLKNIELE GTFEQIKQAS TMVRELIVSI GVGSGPMKTF GGAGGPPTPR SNFKTKLCEN  180
FSKGSCTFGD RCHFAHGAAE LRKTGLLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-105zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R07e-74C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D8XVQ81e-101A0A4D8XVQ8_SALSN; Uncharacterized protein
TrEMBLA0A4D9B8X61e-101A0A4D9B8X6_SALSN; Uncharacterized protein
STRINGXP_009767111.14e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498