PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100067690011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 174aa MW: 19448.2 Da PI: 4.6457

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100067690011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.3e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrr+C+++C++ap+f eq +++fa+vhk+FGasnv+kll++lp + r+da+ ++ yeA ar++dP+yG+v++i Ote100067690011\|100067690011 7 SCGACKFLRRRCTEECIFAPHFSYEQaAAHFAAVHKVFGASNVSKLLSHLPVHSRSDAAITISYEALARMQDPIYGCVSHI 87 6*********************9978************************************************* PP DUF260 81 lklqqqleqlkaelallkee 100 ++lqqq+++l++e+++++++ Ote100067690011\|100067690011 88 FALQQQVACLAEEIEMIEKQ 107 ************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.649	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MTGVSSSCGA CKFLRRRCTE ECIFAPHFSY EQAAAHFAAV HKVFGASNVS KLLSHLPVHS 60 RSDAAITISY EALARMQDPI YGCVSHIFAL QQQVACLAEE IEMIEKQMGN VGIVPLETSI 120 PYFSSDEAAG VPWWQYPEMN DEGYLNSSII DMLLQELTQD YYLHEQLMIC NPFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-35	3	125	7	131	LOB family transfactor Ramosa2.1
5ly0_B	8e-35	3	125	7	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858285.1	1e-77	PREDICTED: LOB domain-containing protein 33
Swissprot	Q9LHS8	2e-53	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A022PYK8	3e-76	A0A022PYK8_ERYGU; Uncharacterized protein
STRING	Migut.F00757.1.p	6e-77	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]