PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100067690031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 140aa    MW: 16112.2 Da    PI: 8.5032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100067690031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-053052123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ C + F++   L  H+++H
  Ote100067690031|100067690031 30 YSCTFCRREFRSAQALGGHMNVH 52
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-62756No hitNo description
Gene3DG3DSA:3.30.160.606.3E-42855IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1573057IPR007087Zinc finger, C2H2
PfamPF139121.9E-53053IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MHREFPPTKK YYFQPPPFFQ DSLVWPPRSY SCTFCRREFR SAQALGGHMN VHRRDRARLK  60
HSPPPLQSQL QESSAAAGNP SIINTHPSRR RSDGGEEREC DMDEDDFVCK RHKLCSSISM  120
EEIDLELRLG VPAVKLGQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-132552229superman protein
2l1o_A3e-132552229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858108.19e-24PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_018810737.16e-24PREDICTED: transcriptional regulator SUPERMAN-like isoform X2
SwissprotO809423e-18ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A4D8ZQA41e-36A0A4D8ZQA4_SALSN; Uncharacterized protein
STRINGMigut.F00753.1.p3e-23(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453