PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100069500081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 414aa    MW: 47696.4 Da    PI: 8.1868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100069500081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.7e-076585323
                                  ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                  C+ Cg sF+ + +Lk+H+++H
  Ote100069500081|100069500081 65 CEGCGASFRKPAHLKQHMQSH 85
                                  *******************99 PP
2zf-C2H215.93.7e-05153171523
                                   TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                   dC  s++rk++L+rH+ +H
  Ote100069500081|100069500081 153 DCQASYRRKDHLTRHMLSH 171
                                   9****************99 PP
3zf-C2H214.88.4e-05176201123
                                   EEET..TTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                   y C+   C+++F+ + n++rH +  H
  Ote100069500081|100069500081 176 YACTveGCKRTFTFQGNMTRHVKEfH 201
                                   789999****************9988 PP
4zf-C2H219.91.9e-06215239123
                                   EEET..TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                   ++C+   Cgk+F+ +s L++H+ +H
  Ote100069500081|100069500081 215 HVCSehGCGKTFKYPSKLQKHQDSH 239
                                   689999****************998 PP
5zf-C2H219.13.4e-06306330223
                                   EET..TTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                   kC+  dC+ sFs+ snL +Hi+  H
  Ote100069500081|100069500081 306 KCSvkDCTLSFSTTSNLSQHIKAvH 330
                                   79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-61885No hitNo description
PROSITE profilePS501578.9952047IPR007087Zinc finger, C2H2
SMARTSM00355242042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-56086IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0116390IPR007087Zinc finger, C2H2
SMARTSM003550.0496385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM0035552152171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4153173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.17E-7157201No hitNo description
Gene3DG3DSA:3.30.160.605.3E-6174201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.681176201IPR007087Zinc finger, C2H2
SMARTSM003550.015176201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-6215239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.762215244IPR007087Zinc finger, C2H2
SMARTSM003550.0045215239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217239IPR007087Zinc finger, C2H2
SMARTSM003550.94247272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
SMARTSM003559.1275296IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-6286327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.97E-8286343No hitNo description
PROSITE profilePS5015711.531305335IPR007087Zinc finger, C2H2
SMARTSM003550.015305330IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280307330IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4334357IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035527336362IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280338362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAADDVEKAE EPIFRDIRRY YCEFCGICRS KKALIAAHIR AHHEEELKEK EMNEEKEPCE  60
KLNACEGCGA SFRKPAHLKQ HMQSHSLEIE EWHCHDILLG VKHWIPNQRT PKCERQQITG  120
SQMKELQNAE ASNVYLEWIS TSFRVGVGLG LNDCQASYRR KDHLTRHMLS HQGKVYACTV  180
EGCKRTFTFQ GNMTRHVKEF HGEFDSAGAN HPVEHVCSEH GCGKTFKYPS KLQKHQDSHV  240
KLDSVDAFCA EPGCMKAFSN ERCLIEHIRS CHQHITCDEC GTKQLKKNIK RHMRMHEEQP  300
PAERIKCSVK DCTLSFSTTS NLSQHIKAVH LEIKPFICGM PGCHKRFAFK HVRDNHEKSG  360
CHIYTPGNFE ESDEQFRSRP RGGRKRDFPG IETLMRKRIV PPSECELRNV GHGI
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804391.11e-152PREDICTED: transcription factor IIIA-like isoform X1
RefseqXP_016477868.11e-152PREDICTED: transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-118TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A4D8ZUK60.0A0A4D8ZUK6_SALSN; General transcription factor IIIA
STRINGVIT_08s0040g00240.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447