PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100069650011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YA

Protein Properties

Length: 127aa MW: 14634.8 Da PI: 11.1299

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100069650011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	88.4	9.8e-28	12	68	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++I++RR +Rak+e+++ ++ rkpy+h SRh hA+rR+RgsgGrF Ote100069650011\|100069650011 12 RPIFVNAKQYNGIMRRRRSRAKAESKNHNMKMMRKPYMHLSRHLHAVRRQRGSGGRF 68 59************************99************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.3E-25	9	71	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	30.31	10	71	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.0E-21	13	35	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-23	13	68	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	15	35	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	7.0E-21	45	68	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MMLPLSMSSD GRPIFVNAKQ YNGIMRRRRS RAKAESKNHN MKMMRKPYMH LSRHLHAVRR 60 QRGSGGRFLS GKKGEKMQEN LSTESQASDG IHSTKAVSSE VTSYLHHFEF DRLHPSFLDV 120 GNDYLKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-14	13	73	4	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A	6e-14	13	71	4	62	HAPB protein
4g92_A	6e-14	13	71	4	62	HAPB protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094246.1	6e-32	nuclear transcription factor Y subunit A-10
Refseq	XP_020553756.1	6e-32	nuclear transcription factor Y subunit A-10
Refseq	XP_020553757.1	6e-32	nuclear transcription factor Y subunit A-10
Swissprot	Q8VY64	6e-25	NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBL	A0A4D8YVX0	1e-43	A0A4D8YVX0_SALSN; Uncharacterized protein
TrEMBL	A0A4D9C2M4	1e-43	A0A4D9C2M4_SALSN; Uncharacterized protein
STRING	VIT_08s0032g01190.t01	3e-26	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]