PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100070040011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 176aa    MW: 19103.4 Da    PI: 4.6579
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100070040011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS121.88.5e-382714329141
                          GRAS  29 elaspdg.dpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIlea 105
                                   el+sp++ ++m+Rlaa+ft AL++ + +  s+++      p + +e++ + ++laa++l++++sP++kf+h+taNqaIlea
  Ote100070040011|100070040011  27 ELVSPNDgTNMERLAACFTDALQSLIDGggSGKQGGGGGGPHQFKEEHhQNDVLAAFQLLQDMSPYVKFGHFTANQAILEA 107
                                   44555444*******************9666666666667777666665999***************************** PP

                          GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
                                   v +++rvHi+D+di++G+QW++L+qaL sR++gpp+
  Ote100070040011|100070040011 108 VTHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPT 143
                                   *********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.2731176IPR005202Transcription factor GRAS
PfamPF035142.9E-3527143IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MMDENVALQQ QSIHELNQEY NNLSPEELVS PNDGTNMERL AACFTDALQS LIDGGGSGKQ  60
GGGGGGPHQF KEEHHQNDVL AAFQLLQDMS PYVKFGHFTA NQAILEAVTH DRRVHIVDYD  120
IMEGIQWASL MQALVSRKDG PPTXXXXXXX XXXXQQSREA GAGAGPSAPS KKPDGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-211814236158Protein SCARECROW
5b3h_A6e-211814235157Protein SCARECROW
5b3h_D6e-211814235157Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069635.17e-65nodulation-signaling pathway 2 protein
SwissprotQ5NE247e-41NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2G9H2705e-63A0A2G9H270_9LAMI; Uncharacterized protein
STRINGEOY162277e-59(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]