PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100070460001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 249aa    MW: 27488.1 Da    PI: 6.5178
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100070460001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.23e-2726854121
                           NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121
                                   +e+ewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ ++ lvg+kktLvfy+grapkgekt+W
  Ote100070460001|100070460001   2 GEREWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-GSVLVGMKKTLVFYRGRAPKGEKTNW 68 
                                   578**************************************.************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.1671107IPR003441NAC domain
SuperFamilySSF1019419.02E-30279IPR003441NAC domain
PfamPF023651.3E-9668IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGEREWYFFS LRDRKYPTGL RTNRATEAGY WKTTGKDKEI FRGSVLVGMK KTLVFYRGRA  60
PKGEKTNWEE WVVCRVFQKS TTVKRPQQTA SSPPSQADES ACDTNALVNE LGDIELPNFS  120
SNSMALSAPS TNAALQNXXX XXXTDASIMN WNTAATDAVN SITWPLLSTN LSMNSLLLTA  180
LQLRGHSAAA ADNYSLMSHT TDMMNPFGNG GGGDNHDFTS THFNMASTSS LPQPPSTEQP  240
PYNVDSNIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-2618568171NO APICAL MERISTEM PROTEIN
1ut4_B7e-2618568171NO APICAL MERISTEM PROTEIN
1ut7_A7e-2618568171NO APICAL MERISTEM PROTEIN
1ut7_B7e-2618568171NO APICAL MERISTEM PROTEIN
4dul_A7e-2618568171NAC domain-containing protein 19
4dul_B7e-2618568171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096994.11e-100NAC domain-containing protein 92
TrEMBLA0A2G9HGW44e-98A0A2G9HGW4_9LAMI; Uncharacterized protein
STRINGEOY210312e-76(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279