PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100070640061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 420aa    MW: 46614 Da    PI: 6.716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100070640061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30160219159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed++++++tYeg+Hnh+
  Ote100070640061|100070640061 160 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDTSILITTYEGTHNHP 219
                                   58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-32145221IPR003657WRKY domain
SuperFamilySSF1182905.23E-28153221IPR003657WRKY domain
PROSITE profilePS5081129.241155221IPR003657WRKY domain
SMARTSM007741.7E-37160220IPR003657WRKY domain
PfamPF031062.4E-27161219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEPDLSLKLD AQEEKLELST IQQPQNSDKG FIKEELSVLQ MQMDRVKEEN KFLRDAVEQT  60
MKDYSDLQTK FAVVQQNNKN KDPSMIQLLN GRNKDDVVEN DGLGLSLRVA SSSGEVEGGS  120
HTPEKREGGF RQMHANNFMN NTPNKRARVS VRARCESATM NDGCQWRKYG QKIAKGNPCP  180
RAYYRCTVAP GCPVRKQVQR CLEDTSILIT TYEGTHNHPL PVGATAMAST TSAFMMFDLN  240
NNNKEILHPT SNQPHSHYYT NNINSPLFIN PSSPYAPNLR PLNPNYYDPT KGIVLDLTNN  300
PTSSNSPTPN LAYSLIPKPP SINGNTLFTQ LFPISNRSLQ DQNQENFGKT MLSENVSAIT  360
SDPKFRVAVA AAISSLINKE SQTVPKDGES GGNNNGNSLV EDGTWILESS SNPIYHSPTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23147223176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092693.21e-133probable WRKY transcription factor 9
SwissprotQ9C9F05e-68WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A4D8ZYB70.0A0A4D8ZYB7_SALSN; Uncharacterized protein
STRINGEOX974001e-103(Theobroma cacao)
STRINGXP_010277690.11e-103(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129