PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100070990011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 342aa    MW: 38722.9 Da    PI: 6.2349
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100070990011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29128188259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v+eitY+g+H ++
  Ote100070990011|100070990011 128 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlvkNCWATKQVQRSDDDPTVFEITYKGTHSCN 188
                                   8***************************9999**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.827122190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-28123189IPR003657WRKY domain
SuperFamilySSF1182904.32E-26126189IPR003657WRKY domain
SMARTSM007741.9E-38127189IPR003657WRKY domain
PfamPF031068.7E-27128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MESACTWEYN TLIKELVQGM EKAKQLQFHL YSTSPSRAQD MLLQRILSSY EKALSILNWK  60
APVEQPRATG PVSGTLESSI SVDGSEEFNN YIRVDHHDYN ASKKRKMQPT WTEQVRVNPE  120
NGLEGPTDDG YSWRKYGQKD ILGAKYPRSY YRCTYRLVKN CWATKQVQRS DDDPTVFEIT  180
YKGTHSCNQS TTNGFPPPEK QHISHEQALS NLKATLRVNT ENLDRKETSL PAQFSFPPTY  240
QLHDEEDQYI SVSTLVGDAH LGAYSPLLLS PAASETNYFS PAPHHVKSFG GSHDYQNLES  300
DIAEILSAHA STTNSPIGSM EFPVDRLNFD PNFPFSTSGF FR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18128187968OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551475.11e-163probable WRKY transcription factor 53
TrEMBLA0A4D9A7C60.0A0A4D9A7C6_SALSN; Uncharacterized protein
STRINGMigut.E01246.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467