PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100071630021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23971.1 Da    PI: 8.4517
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100071630021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.29.3e-231411151
                                  HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  vtfskRr g+lKKA+E+S+LCda+v +i+fs++gkl+ey++
  Ote100071630021|100071630021  1 VTFSKRRSGLLKKAHEISILCDADVGLIVFSTKGKLFEYAT 41
                                  8**************************************86 PP
2K-box86.45.6e-2958146290
                         K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                   ++++ k+ e +  +s++ e+akLk+++e Lqr+qRh++GedLe+Ls+keLq+Le+q++ slk iR++Kn+ll e+i+elqk
  Ote100071630021|100071630021  58 NEKQLKEPELELPASWTLEHAKLKARMEVLQRNQRHYMGEDLETLSMKELQNLEHQIDISLKYIRTRKNQLLNESISELQK 138
                                   556666666667789****************************************************************** PP

                         K-box  83 kekelqee 90 
                                   k ke +++
  Ote100071630021|100071630021 139 KIKEREKQ 146
                                   99887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.077143IPR002100Transcription factor, MADS-box
PfamPF003191.8E-19139IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-17142IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-24170IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-17520IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-172041IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.38770157IPR002487Transcription factor, K-box
PfamPF014861.2E-2272146IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
VTFSKRRSGL LKKAHEISIL CDADVGLIVF STKGKLFEYA TDSCMERILE RYERYSYNEK  60
QLKEPELELP ASWTLEHAKL KARMEVLQRN QRHYMGEDLE TLSMKELQNL EHQIDISLKY  120
IRTRKNQLLN ESISELQKKI KEREKQLARK ATATRTTTTE QQNHDFNCSG FDHTETMGSI  180
NISEVYPPXX XXXXXXXXXX XASPK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086917.16e-98truncated transcription factor CAULIFLOWER A
RefseqXP_011086918.16e-98truncated transcription factor CAULIFLOWER A
SwissprotQ424295e-84AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2G9H5729e-95A0A2G9H572_9LAMI; MADS box transcription factor
STRINGXP_009792071.12e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]