PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100072310011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 185aa MW: 21517.6 Da PI: 9.5148

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100072310011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.2	1.5e-44	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknr 76 +p GfrF Pt+eelv++yL++k+e+++ ++++vi+ +diy+++Pw+L+k +++e+++w+fF++r++++ +g r++r Ote100072310011\|100072310011 4 VPTGFRFFPTEEELVSFYLHNKLEDDQtSSINRVIPVLDIYQLDPWHLRKycgeFCHGESEQWFFFMPRQEREVRGGRPSR 84 589******************99994566778**********9646653444778**************** PP NAM 77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +t+sgyWkatg+ + v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ Ote100072310011\|100072310011 85 TTASGYWKATGSPTYVYSSENKVIGVKKSMVFYKGKAPTGRKTKWKMNEYRA 136 ************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-47	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	46.315	4	160	IPR003441	NAC domain
Pfam	PF02365	1.8E-23	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MEEVPTGFRF FPTEEELVSF YLHNKLEDDQ TSSINRVIPV LDIYQLDPWH LRKYCGEFCH 60 GESEQWFFFM PRQEREVRGG RPSRTTASGY WKATGSPTYV YSSENKVIGV KKSMVFYKGK 120 APTGRKTKWK MNEYRAIKQD VNTSIPMLRH EMCLCRVYVV SGSLRAFDRR PTRVTVAETS 180 SASAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-34	4	158	20	166	NAC domain-containing protein 19
3swm_B	8e-34	4	158	20	166	NAC domain-containing protein 19
3swm_C	8e-34	4	158	20	166	NAC domain-containing protein 19
3swm_D	8e-34	4	158	20	166	NAC domain-containing protein 19
3swp_A	8e-34	4	158	20	166	NAC domain-containing protein 19
3swp_B	8e-34	4	158	20	166	NAC domain-containing protein 19
3swp_C	8e-34	4	158	20	166	NAC domain-containing protein 19
3swp_D	8e-34	4	158	20	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022851387.1	1e-100	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	6e-84	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A4D9BZ26	1e-105	A0A4D9BZ26_SALSN; Uncharacterized protein
STRING	Migut.N02478.1.p	1e-100	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]