PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100072620171

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 144aa MW: 15783.1 Da PI: 7.5084

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100072620171	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.6	1.7e-06	37	72	14	54
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++i ++++ L++l+ + +K + a++L +A+eYIk L Ote100072620171\|100072620171 37 EKISERISALQQLVSPY-----GKTDTASVLLEAMEYIKFL 72 689**********99.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.39E-8	21	76	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-10	22	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.411	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-12	25	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0018	31	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MMQHKRGPIS LDQSSFMDIM PKRIKTDAPL ASKEKKEKIS ERISALQQLV SPYGKTDTAS 60 VLLEAMEYIK FLHEQVTVLS APYLYSTSQL QDDETSSLSG KGLCLVPLSF TVGVANSNGA 120 DLWAPIKTTS KRSISDEASV ITQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091560.1	6e-78	transcription factor bHLH113 isoform X1
Refseq	XP_011091561.1	3e-78	transcription factor bHLH113 isoform X2
Refseq	XP_011091562.1	3e-78	transcription factor bHLH113 isoform X2
Swissprot	Q7XJU2	2e-49	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A4D9C2D2	4e-81	A0A4D9C2D2_SALSN; Uncharacterized protein
STRING	Migut.N03067.1.p	2e-76	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10428	8	11

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]