PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100074340211

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Whirly

Protein Properties

Length: 238aa MW: 25881.9 Da PI: 10.4307

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100074340211	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	204.8	1e-63	60	198	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpa 81 s+yk+kaal+ ++v+p+f++ldsg +++r+G ++l+l +a++erkydW+k+q+falsatev++l++l++k+sceffhdp+ Ote100074340211\|100074340211 60 SIYKGKAALSADPVLPKFTKLDSGDYRVERRGVIMLTLWPAIGERKYDWDKRQKFALSATEVGSLINLGPKDSCEFFHDPS 140 7****************************************************************************** PP Whirly 82 akgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 + +sn+G+vrk+l+++ ++dGsG+fv+lsv ns++++n++++vPv+ aefav+r++++ Ote100074340211\|100074340211 141 MLSSNAGQVRKSLSIKAHADGSGYFVSLSVVNSVQHTNDRLVVPVTAAEFAVMRTAFS 198 *****************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	1.9E-72	51	212	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	3.53E-65	54	232	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	7.2E-59	61	195	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MVLKLSRLLL HSTRGSSSSM KVMGVAPNDL KLLRGIASLA GMSAAAPSFE SGAKVFAPYS 60 IYKGKAALSA DPVLPKFTKL DSGDYRVERR GVIMLTLWPA IGERKYDWDK RQKFALSATE 120 VGSLINLGPK DSCEFFHDPS MLSSNAGQVR KSLSIKAHAD GSGYFVSLSV VNSVQHTNDR 180 LVVPVTAAEF AVMRTAFSFA LPHIMGWDIT LGKLPLRSNQ GSPRATPIPE PRSSEWDR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	1e-88	53	208	9	164	StWhy2
3n1i_A	1e-88	53	208	9	164	protein StWhy2
3n1j_A	1e-88	53	208	9	164	Protein StWhy2
3n1k_A	1e-88	53	208	9	164	protein StWhy2
3n1l_A	1e-88	53	208	9	164	protein StWhy2
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095185.1	1e-120	single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2
Swissprot	D9J034	4e-91	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A4D8Z3P9	1e-120	A0A4D8Z3P9_SALSN; Uncharacterized protein
STRING	Migut.C01402.1.p	1e-110	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9782	22	28