PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100074920041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-X1
Protein Properties Length: 982aa    MW: 108155 Da    PI: 8.1725
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100074920041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.32.7e-07303321119
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                   CG+H+C++ CH GpC+pC+
  Ote100074920041|100074920041 303 CGRHRCGRVCHVGPCDPCQ 321
                                   ******************6 PP
2zf-NF-X120.97.5e-07367384118
                      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                   CG+H Cq++CH+GpC +C
  Ote100074920041|100074920041 367 CGNHFCQETCHPGPCAEC 384
                                   ****************** PP
3zf-NF-X117.21.1e-05425442118
                      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                   CG H Cq  CH GpC pC
  Ote100074920041|100074920041 425 CGLHNCQDVCHSGPCSPC 442
                                   ****************** PP
4zf-NF-X1201.5e-06528546119
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                   CGkH+C++lCH G CppC 
  Ote100074920041|100074920041 528 CGKHSCISLCHSGHCPPCL 546
                                   ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.92E-7125196No hitNo description
PROSITE profilePS500168.929133194IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.834136192IPR001841Zinc finger, RING-type
PROSITE patternPS013590136191IPR019786Zinc finger, PHD-type, conserved site
CDDcd060086.31E-5225286No hitNo description
SMARTSM004380.21248266IPR000967Zinc finger, NF-X1-type
PfamPF014227250265IPR000967Zinc finger, NF-X1-type
CDDcd060081.29E-10293341No hitNo description
PfamPF014223.0E-5303320IPR000967Zinc finger, NF-X1-type
SMARTSM004382.5E-4303322IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-6357399No hitNo description
PfamPF014225.1E-5367384IPR000967Zinc finger, NF-X1-type
SMARTSM004383.9E-5367386IPR000967Zinc finger, NF-X1-type
CDDcd060089.88E-13415463No hitNo description
PfamPF014228.7E-6425442IPR000967Zinc finger, NF-X1-type
SMARTSM004385.4E-4425444IPR000967Zinc finger, NF-X1-type
CDDcd060086.07E-7518561No hitNo description
PfamPF014227.1E-5528545IPR000967Zinc finger, NF-X1-type
SMARTSM004385.0E-4528547IPR000967Zinc finger, NF-X1-type
SMARTSM0043872597611IPR000967Zinc finger, NF-X1-type
PfamPF014223.6601610IPR000967Zinc finger, NF-X1-type
PfamPF014220.021627642IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11627657IPR000967Zinc finger, NF-X1-type
PfamPF0142230659685IPR000967Zinc finger, NF-X1-type
SMARTSM004380.057666687IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MSSEPSRWRE NSNYRPRHNN PSRNNRRGWV PRVSAPVVTA VRIPLENVVI ASQNENGNGG  60
ELVDRPVPPI VNRTHGGSRX XXXXXXXXXX HVGQREKEKV ERNQNHEVSF RMLKGVNIPQ  120
LVQEIQDKLT KGSVECMICY DMVRRSAPIW SCTSCYSIFH LSCIKKWARA PTSIDLLAEK  180
NQGSNWRCPG CQSVQLISAK EIRYTCFCSK RADPPSDLYL TPHSCGEPCG KPLEKELPGG  240
GMSDEDICPH ICVLQCHPGP CPPCKAFAPP RRCPCGKKVI TTRCSDRESV LTCGQRCDKP  300
LDCGRHRCGR VCHVGPCDPC QVLLNASCFC SKKTEVLLCG EMIIKGEIKG QDGLFSCNLS  360
CENKLNCGNH FCQETCHPGP CAECELLPRK IKKCCCGKTG LNEERQSCLD PIPTCSQICG  420
KTLPCGLHNC QDVCHSGPCS PCNVLVTQKC RCGSTSRTVE CYKTAPDGEK FTCDRXXXXX  480
XXXXXXXXXX XXXXXXXRCC PLSNSLSSTM VNENPHLCTM PCEKKLRCGK HSCISLCHSG  540
HCPPCLETIF SDLTCACGRT SIPPPLPCGT PPPSCQFPCS VPXXXXXXXX XXXXXXSSHS  600
CHFGDCPPCT VPIPKECNKL CGKTRQCGLH ACSRTCHPPP CDSSASSSSS SRTSCGQTCG  660
APRRDCRHTC KAICHPATPC PDVRCEFPVT ITCSCGRINA TVPXXXXXXX XXXXXTVLEA  720
SVTQKLPVPR QPTEENAQKV PLGLRKLVCD DECTKVERKK VLADAFGVSP PNLDALHFGD  780
SASVSEVLSD LLRRDPKWVL SVEERCRYLV LGRGRISGLK VHVFCVMTKE RRDAVRLVAE  840
RWKLSVNAAG WEPRGFVIVH VTPKSKAPAR VLGVKSFNPC NMLQPPIFDP LGCNCYEEVG  900
SGVCVSWGGR TCSKWQGIGC SIXXXXXXXX XXXXXXLKAN PWKKVVLEFK ESSRAASSSS  960
LNLSSLQQEG GDVVDDWESA CD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083338.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A4D9AC780.0A0A4D9AC78_SALSN; Transcriptional repressor NF-X1
STRINGMigut.D01221.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428