PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100074920111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

BBR-BPC

Protein Properties

Length: 304aa MW: 33667.1 Da PI: 9.7327

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100074920111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	282.4	2e-86	1	304	1	301
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki...rernlalsekkaav........aerd.....maflqr 63 md +g+++ rn+g+ +p +++k+++glql++s+ae+ +e+++ ++ a++ +++ +++ Ote100074920111\|100074920111 1 MDGNGNMNfRNWGFLDPPtSNIKNHIGLQLITSMAEKPLFGtdfHEHQH--LHPYAVMssinggpfHHHRvggnsESHIPV 79 999***********98899**********98644344444333..222222222233333444456666555566 PP GAGA_bind 64 dkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeea 144 + ++++ ++k+l +++ + + ++++++++t+s +s+q+ ++ ++++ ++e+e+ +++ + Ote100074920111\|100074920111 80 EYWMNH-------NREKYLDIMPENLQ-PAYYQSSYGASPDTSSPHSVQMPQQFSSQKNSCVMPEMEEACEEK-DDGGGAF 151 667766.......77889999885554.4555578999********66655566666666666433333.2222222 PP GAGA_bind 145 kekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkW 225 +k+ ++ +++ pkekk ++ +++ k++ ++s ++ ++ kk ++v+ng+++D+s +P+PvCsCtGa++qCY+W Ote100074920111\|100074920111 152 VNKRGGGNKVSNSLPKEKK---PRTRTPRVPKHKPTSS-SNLGRTAKKGAEIVINGINIDISDIPIPVCSCTGAPHQCYRW 228 2222222233334444444...4333333323333333.36789********************************* PP GAGA_bind 226 GnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 G+GGWqSaCCtt +SvyPLP+s+krrgaRiagrKmS gafkk+LekL + Gyd+s p+DL++hWAkHGtnkfvtir Ote100074920111\|100074920111 229 GTGGWQSACCTTGMSVYPLPMSSKRRGARIAGRKMSIGAFKKVLEKLGSKGYDFSSPIDLRSHWAKHGTNKFVTIR 304 *************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.0E-108	1	304	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.3E-89	1	304	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDGNGNMNFR NWGFLDPPTS NIKNHIGLQL ITSMAEKPLF GTDFHEHQHL HPYAVMSSIN 60 GGPFHHHRVG GNSESHIPVE YWMNHNREKY LDIMPENLQP AYYQSSYGAS PDTSSPHSVQ 120 MPQQFSSQKN SCVMPEMEEA CEEKDDGGGA FVNKRGGGNK VSNSLPKEKK PRTRTPRVPK 180 HKPTSSSNLG RTAKKGAEIV INGINIDISD IPIPVCSCTG APHQCYRWGT GGWQSACCTT 240 GMSVYPLPMS SKRRGARIAG RKMSIGAFKK VLEKLGSKGY DFSSPIDLRS HWAKHGTNKF 300 VTIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083223.1	1e-153	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A4D9AJW2	1e-162	A0A4D9AJW2_SALSN; Uncharacterized protein
STRING	XP_009761371.1	1e-103	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26