PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100074970091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YC
Protein Properties Length: 244aa    MW: 27192.7 Da    PI: 5.5226
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100074970091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.1e-56701741102
                         NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 
                                   ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+d
  Ote100074970091|100074970091  70 QLQAFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKND 150
                                   89******988889******************************************************************* PP

                         NF-YC  79 iaaavtrtdifdflvdivprdelk 102
                                   iaaa++rtd+fdflvdi+prdelk
  Ote100074970091|100074970091 151 IAAAISRTDVFDFLVDIIPRDELK 174
                                   *********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.88E-3462164IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-3784156IPR009072Histone-fold
PfamPF008082.0E-2192155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDHPDHHNQQ QQQPGVGGSL AYATPPFQTA SMVATGTPAV TVSSPTSFPP QQQLAYHQAQ  60
HFQSQQHQQQ LQAFWANQMQ EIEQTTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA  120
KACEMFILEL TLRSWIHTEE NKRRTLQKND IAAAISRTDV FDFLVDIIPR DELKEEGLGI  180
TKGSIPLVGS NPDAVPYYYM PPQGPVGAAG MIMGKPVDLY GGQPPPPFLQ WPQQQPPSQE  240
QPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-5978170395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095726.11e-119nuclear transcription factor Y subunit C-2
RefseqXP_011095727.11e-119nuclear transcription factor Y subunit C-2
SwissprotQ8LCG71e-81NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A4D9B5N41e-128A0A4D9B5N4_SALSN; Uncharacterized protein
STRINGcassava4.1_014024m1e-106(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]