PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100075920071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25368.9 Da PI: 8.5013

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100075920071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	105	159	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++ ++ +e+ LA++l+L rqV vWFqNrRa+ k Ote100075920071\|100075920071 105 RKKLRLSKQQSAFLEDSFKEHTSLNPKEKVALAMRLNLRPRQVEVWFQNRRARTK 159 788899***********************************************98 PP
2	HD-ZIP_I/II	118.3	4.2e-38	105	193	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlsk+q+++LE+sF+e++ L+p++Kv+la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+L r++++l+een+rL+ Ote100075920071\|100075920071 105 RKKLRLSKQQSAFLEDSFKEHTSLNPKEKVALAMRLNLRPRQVEVWFQNRRARTKLKQTEMDCEYLTRCCERLREENTRLQ 185 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLre 89 k+ +eLr+ Ote100075920071\|100075920071 186 KQIHELRR 193 ****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-19	80	162	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-17	81	162	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.698	101	161	IPR001356	Homeobox domain
SMART	SM00389	2.4E-15	103	165	IPR001356	Homeobox domain
Pfam	PF00046	5.4E-15	105	159	IPR001356	Homeobox domain
CDD	cd00086	1.63E-14	105	162	No hit	No description
PROSITE pattern	PS00027	0	136	159	IPR017970	Homeobox, conserved site
SMART	SM00340	6.3E-16	161	204	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.2E-9	161	192	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MELGLILGQT PKALSLEKSI ETDLGFCMAV GRCRETDPLL HLHLHTNNLP FTNFLSLNLL 60 SEEGRRVEKA EEGPSLSSPF STVSSFQMEI SNNLNEPRGN GEASRKKLRL SKQQSAFLED 120 SFKEHTSLNP KEKVALAMRL NLRPRQVEVW FQNRRARTKL KQTEMDCEYL TRCCERLREE 180 NTRLQKQIHE LRRAHNSNSF YMPPTTLTMC PSCQTVDGGA ST

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520539.1	7e-69	homeobox-leucine zipper protein HOX11
Refseq	XP_022864672.1	1e-68	homeobox-leucine zipper protein HOX11-like isoform X2
Refseq	XP_028225408.1	7e-69	homeobox-leucine zipper protein HOX11-like
Swissprot	P46665	3e-59	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A0K2CTA0	2e-67	A0A0K2CTA0_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBL	A0A445LBK6	2e-67	A0A445LBK6_GLYSO; Homeobox-leucine zipper protein HAT14
TrEMBL	I1JNL9	2e-67	I1JNL9_SOYBN; Uncharacterized protein
STRING	GLYMA03G30200.1	3e-68	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186