PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100077010071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 189aa MW: 21081.1 Da PI: 5.9936

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100077010071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136	1.4e-42	27	126	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpee+r da+ss+vyeA+ar+rdPvyG++g i Ote100077010071\|100077010071 27 PCAACKILRRRCVEKCVLAPYFPPHDPLKFSTAHRVFGASNIIKFLQELPEEQRADAVSSMVYEANARLRDPVYGCAGAIC 107 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q+++l+++la++++e Ote100077010071\|100077010071 108 QLQKQVNELQEQLAKAQAE 126 *************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.285	26	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-43	27	124	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MKMDGGDTIN TSSSSSSYPP HSVVLSPCAA CKILRRRCVE KCVLAPYFPP HDPLKFSTAH 60 RVFGASNIIK FLQELPEEQR ADAVSSMVYE ANARLRDPVY GCAGAICQLQ KQVNELQEQL 120 AKAQAEMVNM QCQHSNLMAL ICMEMAQSTQ TMLPHEEQSF GGSPNSYQSK TSFIEDYNNL 180 GILWEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-44	26	132	10	116	LOB family transfactor Ramosa2.1
5ly0_B	3e-44	26	132	10	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021683852.1	3e-93	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-71	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2G9GMD1	2e-96	A0A2G9GMD1_9LAMI; Uncharacterized protein
STRING	EOY33105	2e-90	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669