PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100077290071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28117.6 Da    PI: 9.0959
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100077290071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46e-312574150
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  Ote100077290071|100077290071 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 74
                                  79***********************************************8 PP
2K-box97.22.5e-32931904100
                         K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk. 83 
                                   s++ s +e +++++qqe++kL+++i+nLq+++R+++Ge+L+ Lsl++L+ Le+++e+++++iRskKn+ll+++ie l+k+ 
  Ote100077290071|100077290071  93 SNNGSISEVNTQYYQQESSKLRAQISNLQNQNRNMIGESLGGLSLRDLKTLESKVERGISRIRSKKNDLLCAEIEFLRKRq 173
                                   3444499**********************************************************************9873 PP

                         K-box  84 ekelqeenkaLrkklee 100
                                   e el ++n++Lr+k+ e
  Ote100077290071|100077290071 174 EIELYHNNQCLRAKISE 190
                                   679***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.9271777IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-391776IPR002100Transcription factor, MADS-box
CDDcd002653.10E-441894No hitNo description
SuperFamilySSF554556.67E-331892IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-321939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003192.2E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-325475IPR002100Transcription factor, MADS-box
PfamPF014866.6E-23102188IPR002487Transcription factor, K-box
PROSITE profilePS5129714.016103194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEFQSDRSRD ISPQRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVVFSTRGRL YEYANNSVKA TIERYKKASS DSSNNGSISE VNTQYYQQES SKLRAQISNL  120
QNQNRNMIGE SLGGLSLRDL KTLESKVERG ISRIRSKKND LLCAEIEFLR KRQEIELYHN  180
NQCLRAKISE SERAQQHMNL MPGSTEFEFI EPQPFDAPNF LQTNGLHPNE EYPKQEESNL  240
ELM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-2018100286Myocyte-specific enhancer factor 2B
1tqe_Q4e-2018100286Myocyte-specific enhancer factor 2B
1tqe_R4e-2018100286Myocyte-specific enhancer factor 2B
1tqe_S4e-2018100286Myocyte-specific enhancer factor 2B
6c9l_A4e-2018100286Myocyte-specific enhancer factor 2B
6c9l_B4e-2018100286Myocyte-specific enhancer factor 2B
6c9l_C4e-2018100286Myocyte-specific enhancer factor 2B
6c9l_D4e-2018100286Myocyte-specific enhancer factor 2B
6c9l_E4e-2018100286Myocyte-specific enhancer factor 2B
6c9l_F4e-2018100286Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102153.11e-147floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ408851e-130AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A0R6FU881e-149A0A0R6FU88_CATSE; AGAMOUS-like protein
STRINGMigut.M00986.1.p1e-140(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]