PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100077750191
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 178aa    MW: 20288.7 Da    PI: 6.5294
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100077750191genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.72e-081261592154
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  Ote100077750191|100077750191 126 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 159
                                   469*****************************87 PP
2ELK26.31.7e-0980101122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+L++ Y+g+++++++E++
  Ote100077750191|100077750191  80 ELKHELKQDYKGKIVDIREEIL 101
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011880.001180101IPR005539ELK domain
PfamPF037895.9E-680101IPR005539ELK domain
PROSITE profilePS5121310.26680100IPR005539ELK domain
PROSITE profilePS5007111.726100163IPR001356Homeobox domain
SuperFamilySSF466895.13E-17102168IPR009057Homeodomain-like
SMARTSM003892.4E-11102167IPR001356Homeobox domain
CDDcd000868.51E-12103162No hitNo description
Gene3DG3DSA:1.10.10.605.5E-26107164IPR009057Homeodomain-like
PfamPF059203.2E-18120159IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRIVMDQTDA FCIHLLGDSL LTGVAPGEGT GATMSDDDED QADSEANLFD ESMDGGDNMG  60
FGPLVPSETE RSLMERVRQE LKHELKQDYK GKIVDIREEI LRKRRAGKLP GDTTSVLKAW  120
WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSSS TPKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-14103167872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845575.11e-105PREDICTED: homeobox protein knotted-1-like LET12
SwissprotQ0J6N43e-92KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A022QSN11e-104A0A022QSN1_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.K00376.1.p1e-102(Erythranthe guttata)
STRINGMigut.K00654.1.p1e-104(Erythranthe guttata)
STRINGMigut.K00664.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472