PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100078770001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 68aa    MW: 8050.76 Da    PI: 10.2644
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100078770001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.11.3e-122263256
                                  HHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox 32 eLAkklgLterqVkvWFqNrRakek 56
                                  ++A+ lgL+ +qV +WFqN+Ra++k
  Ote100078770001|100078770001  2 QIARDLGLQPKQVAIWFQNKRARWK 26
                                  8***********************9 PP
2HD-ZIP_I/II85.29.2e-282593188
                   HD-ZIP_I/II 31 elareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
                                  ++ar+Lglqp+qva+WFqn+RAR+k+kq+E++y+ Lk++yd+l  + + L++e+++L 
  Ote100078770001|100078770001  2 QIARDLGLQPKQVAIWFQNKRARWKSKQIEQEYRILKSSYDSLLMKFDDLKREKQSLX 59
                                  89******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.536128IPR001356Homeobox domain
CDDcd000862.88E-7229No hitNo description
SuperFamilySSF466891.28E-10239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-12235IPR009057Homeodomain-like
PfamPF000464.7E-10226IPR001356Homeobox domain
PROSITE patternPS000270326IPR017970Homeobox, conserved site
PfamPF021833.9E-122859IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MQIARDLGLQ PKQVAIWFQN KRARWKSKQI EQEYRILKSS YDSLLMKFDD LKREKQSLXX  60
ANAVEGGE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075911.19e-27homeobox-leucine zipper protein ATHB-12-like isoform X2
RefseqXP_020549042.11e-26homeobox-leucine zipper protein ATHB-12-like isoform X1
SwissprotP468976e-23ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2G9HZK17e-26A0A2G9HZK1_9LAMI; Uncharacterized protein
STRINGXP_007136490.18e-23(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]